| bibtype |
C -
Conference Paper (international conference)
|
| ARLID |
0355696 |
| utime |
20240103194754.0 |
| mtime |
20110218235959.9 |
| WOS |
000308455800009 |
| DOI |
10.5220/0003129000220027 |
| title
(primary) (eng) |
Automated counting of yeast colonies using the Fast Radial Transform algorithm |
| specification |
| page_count |
6 s. |
| media_type |
CD-ROM |
|
| serial |
| ARLID |
cav_un_epca*0355695 |
| ISBN |
978-989-8425-36-2 |
| title
|
BIOSTEC 2011 4th International Joint Conference on Biomedical Engineering Systems and Technologies |
| part_title |
BIOINFORMATICS 2011 Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms |
| page_num |
22-27 |
| publisher |
| place |
Lisabon |
| name |
SciTePress |
| year |
2011 |
|
| editor |
| name1 |
Pellegrini |
| name2 |
Marco |
|
| editor |
|
| editor |
| name1 |
Filipe |
| name2 |
Joaquim |
|
| editor |
|
|
| keyword |
Colony counter |
| keyword |
Yeast colonies |
| keyword |
Image segmentation |
| keyword |
Fast radial transform |
| author
(primary) |
| ARLID |
cav_un_auth*0101190 |
| name1 |
Schier |
| name2 |
Jan |
| full_dept (cz) |
Zpracování obrazové informace |
| full_dept (eng) |
Department of Image Processing |
| department (cz) |
ZOI |
| department (eng) |
ZOI |
| institution |
UTIA-B |
| full_dept |
Department of Image Processing |
| fullinstit |
Ústav teorie informace a automatizace AV ČR, v. v. i. |
|
| author
|
| ARLID |
cav_un_auth*0101136 |
| name1 |
Kovář |
| name2 |
Bohumil |
| full_dept (cz) |
Zpracování obrazové informace |
| full_dept |
Department of Image Processing |
| department (cz) |
ZOI |
| department |
ZOI |
| institution |
UTIA-B |
| fullinstit |
Ústav teorie informace a automatizace AV ČR, v. v. i. |
|
| source |
|
| cas_special |
| project |
| project_id |
1M0567 |
| agency |
GA MŠk |
| country |
CZ |
| ARLID |
cav_un_auth*0202350 |
|
| research |
CEZ:AV0Z10750506 |
| abstract
(eng) |
A method for counting yeast colonies in images of Petri dishes, based on the Fast Radial Transform by Loy and Zelinsky, is introduced and evaluated in the paper. Images, produced by a general-purpose imaging setup, are considered. The performance of the method has been evaluated with a test set of 245 images. The images typically contained between 10 and 70 colonies per dish, with relative coverage of the dish less than 10% of the area. The average counting error (missed colonies) on this set was under 4%. A tool, implementing the method, has been developed in Matlab. The tool provides a batch mode for processing of larger image sets prepared beforehand in the darkroom and it automates the process of counting as much as possible. It is available for download or can be requested from the authors of the paper, in both cases free on charge. |
| action |
| ARLID |
cav_un_auth*0269351 |
| name |
BIOINFORMATICS 2011 International Conference on Bioinformatics Models, Methods and Algorithms |
| place |
Řím |
| dates |
26.01.2011-29.1.2011 |
| country |
IT |
|
| reportyear |
2011 |
| RIV |
IN |
| permalink |
http://hdl.handle.net/11104/0194405 |
| arlyear |
2011 |
| mrcbU34 |
000308455800009 WOS |
| mrcbU63 |
cav_un_epca*0355695 BIOSTEC 2011 4th International Joint Conference on Biomedical Engineering Systems and Technologies BIOINFORMATICS 2011 Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms 978-989-8425-36-2 22 27 Lisabon SciTePress 2011 |
| mrcbU67 |
Pellegrini Marco 340 |
| mrcbU67 |
Fred Ana 340 |
| mrcbU67 |
Filipe Joaquim 340 |
| mrcbU67 |
Gamboa Hugo 340 |
|